To run Galaxy using the Windows Subsystem for Linux you need to set up your Windows environment, install Galaxy in your Linux distribution, and for development you can either use a text editor such as EMACS or use a remote development plugin for an IDE as the Linux distributions on Windows does not support graphical user interfaces. The virtual machine is updated once per year and is suitable for tools development while the below process is more suited for running a local production server or develop the source code for Galaxy. There is also a Virtual machine for tools development which comes pre-installed with Galaxy, Planemo and other useful tools. You can find a tutorial on using Virtual Machines to run Galaxy at while the below instructions describe running Galaxy on Windows subsystem for Linux. Running Galaxy on Windows requires the use of Windows Subsystem for Linux on 64-bit Windows 10 or running Linux on a Virtual Machine. Many thanks to Arnaud Belcour for pointing this out.

Watch this space for more information as we explore this option further. With this shell, you can install and run a Galaxy server on the localhost by using all the command on the Linux/Mac OS tutorial. You'll need the Windows Subsystem for Linux on 64-bit Windows 10. Note: It is again possible to run Galaxy on Windows. An example of building the bx-python egg in MinGW/MSYS:.Running old Galaxy (pre 16.01) on Windows.Setting up an IDE on Windows accessing Linux files

For windows instal Galaxy Control